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AT3G54950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : patatin-like protein 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
patatin-like protein 6 (PLA IIIA); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 1058 Blast hits to 1055 proteins in 202 species: Archae - 0; Bacteria - 325; Metazoa - 24; Fungi - 32; Plants - 544; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1488-MONOMEREC:3.1.1.-eggNOG:ENOG410ITWXeggNOG:ENOG4111EY4
EMBL:AK229196EMBL:AL049655EMBL:CP002686EnsemblPlants:AT3G54950
EnsemblPlants:AT3G54950.1entrez:824660GeneID:824660Genevisible:Q9SV43
GO:GO:0004620GO:GO:0005886GO:GO:0006644GO:GO:0016042
GO:GO:0019374GO:GO:0040008GO:GO:0047617GO:GO:0051707
Gramene:AT3G54950.1hmmpanther:PTHR32241hmmpanther:PTHR32241:SF3HOGENOM:HOG000240266
InParanoid:Q9SV43InterPro:IPR002641InterPro:IPR016035KEGG:ath:AT3G54950
OMA:QRRNSRIPaxDb:Q9SV43Pfam:PF01734Pfam:Q9SV43
PhylomeDB:Q9SV43PIR:T06725PRIDE:Q9SV43PRO:PR:Q9SV43
ProteinModelPortal:Q9SV43Proteomes:UP000006548RefSeq:NP_191055.1SMR:Q9SV43
STRING:3702.AT3G54950.1SUPFAM:SSF52151TAIR:AT3G54950tair10-symbols:PLA IIIA
tair10-symbols:PLP7UniGene:At.35065UniProt:Q9SV43
Coordinates (TAIR10) chr3:-:20359076..20360774
Molecular Weight (calculated) 53103.30 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.33
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MHRVRNKPVK STATASVKHL IKQRGGDGAT AASKSANDYN NNDSLLTDMQ EPSIDTDKLS YEIFSILESK FLFGYDDSKP EPANSVVAGS IKNQRGKICI
101: LSIDGGGMRG ILPGKALAYL EHALKSKSGD PNARIADYFD VAAGSGIGGI YTAMLFGSRD GNRPIFKADD TWQFLTRNAK GLYGGAGILK RVLRTGSGCC
201: SGTAKLKKVM KESFSELTLK DTLKPVLIPC YDLKSSGPFL FSRADALETD GYDFRLSEVC RATWAEPGVF EPVEMKSVDG QTKCVAVGGG LAMSNPTAAA
301: ITHVLHNKQE FPFVRGVEDL LVLSLGMGQL LDVSYEYDRI IKWKAKHWAR PAALISNDGA ADTVDQAVAM AFGHCRSSNY VRIQANGSNL GPWSPNMDTD
401: PSGSNVNMLM GVAEEMLKQK NVESVLFGGK RIDEQSNFEK LDWLAGELVL EHQRRNSRIA PTVAFKQSVH RADQKTSDKD IGVTARER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)