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AT5G40390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Raffinose synthase family protein
Curator
Summary (TAIR10)
Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.
Computational
Description (TAIR10)
seed imbibition 1-like (SIP1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, galactinol-sucrose galactosyltransferase activity; INVOLVED IN: mannitol biosynthetic process, raffinose family oligosaccharide biosynthetic process, response to water deprivation, sucrose biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: Raffinose synthase family protein (TAIR:AT5G20250.4); Has 508 Blast hits to 470 proteins in 135 species: Archae - 27; Bacteria - 74; Metazoa - 0; Fungi - 82; Plants - 317; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:19288BRENDA:2.4.1.82CAZy:GH36EC:2.4.1.82
eggNOG:ENOG410IHR2eggNOG:ENOG410YBUAEMBL:AB006702EMBL:AY062781
EMBL:AY081645EMBL:CP002688EnsemblPlants:AT5G40390EnsemblPlants:AT5G40390.1
entrez:834037Gene3D:3.20.20.70GeneID:834037Genevisible:Q9FND9
GO:GO:0005975GO:GO:0006979GO:GO:0009414GO:GO:0009507
GO:GO:0009737GO:GO:0047274Gramene:AT5G40390.1gramene_pathway:2.4.1.-
gramene_pathway:2.4.1.82gramene_pathway:PWY-5337gramene_pathway:PWY-5342hmmpanther:PTHR31268
hmmpanther:PTHR31268:SF2HOGENOM:HOG000237551InParanoid:Q9FND9InterPro:IPR008811
InterPro:IPR013785InterPro:IPR017853iPTMnet:Q9FND9KEGG:ath:AT5G40390
KO:K06617OMA:GAEGMNRPaxDb:Q9FND9Pfam:PF05691
Pfam:Q9FND9PhylomeDB:Q9FND9PRIDE:Q9FND9PRO:PR:Q9FND9
ProteinModelPortal:Q9FND9Proteomes:UP000006548RefSeq:NP_198855.1STRING:3702.AT5G40390.1
SUPFAM:SSF51445TAIR:AT5G40390tair10-symbols:SIP1UniGene:At.8441
UniProt:Q9FND9
Coordinates (TAIR10) chr5:+:16161720..16165085
Molecular Weight (calculated) 86241.60 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.10
Length 783 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPCLTKSD SGINGVDFTE KFRLEDSTLL ANGQVVLTDV PVNVTLTSSP YLVDKDGVPL DVSAGSFIGF NLDGEPKSHH VASIGKLKNI RFMSIFRFKV
101: WWTTHWVGSN GRDIENETQI IILDQSGSDS GPGSGSGRPY VLLLPLLEGS FRSSFQSGED DDVAVCVESG STEVTGSEFR QIVYVHAGDD PFKLVKDAMK
201: VIRVHMNTFK LLEEKSPPGI VDKFGWCTWD AFYLTVNPDG VHKGVKCLVD GGCPPGLVLI DDGWQSIGHD SDGIDVEGMN ITVAGEQMPC RLLKFEENHK
301: FKDYVSPKDQ NDVGMKAFVR DLKDEFSTVD YIYVWHALCG YWGGLRPEAP ALPPSTIIRP ELSPGLKLTM EDLAVDKIIE TGIGFASPDL AKEFYEGLHS
401: HLQNAGIDGV KVDVIHILEM LCQKYGGRVD LAKAYFKALT SSVNKHFNGN GVIASMEHCN DFMFLGTEAI SLGRVGDDFW CTDPSGDPNG TFWLQGCHMV
501: HCAYNSLWMG NFIQPDWDMF QSTHPCAEFH AASRAISGGP IYISDCVGKH DFDLLKRLVL PNGSILRCEY YALPTRDRLF EDPLHDGKTM LKIWNLNKYT
601: GVIGAFNCQG GGWCRETRRN QCFSECVNTL TATTSPKDVE WNSGSSPISI ANVEEFALFL SQSKKLLLSG LNDDLELTLE PFKFELITVS PVVTIEGNSV
701: RFAPIGLVNM LNTSGAIRSL VYNDESVEVG VFGAGEFRVY ASKKPVSCLI DGEVVEFGYE DSMVMVQVPW SGPDGLSSIQ YLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)