AT1G78070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G36070.1); Has 25796 Blast hits to 12397 proteins in 585 species: Archae - 64; Bacteria - 7254; Metazoa - 7661; Fungi - 5235; Plants - 2447; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29355219..29358368 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50669.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDIFDNSDLE YLVDEFHADF DDDEPFGEVD VTSESDSDFM DSDFDFELSE SKTNNETSAL EARNGKDIQG IPWESLNYTR DRYRENRLLH YKNFESLFRS 101: REELDKECLQ VEKGKNFYDF QFNTRLVKST IAHFQLRNLV WATSKHDVYF MNNYSLMHWS SLLQRGKEVL NVAKPIVPSM KQHGSLSQSV SRVQISTMAV 201: KDDLIVAGGF QGELICKKIN EPEVAFCTKL TSADNDITNS VDIYNAPSGS LRVMTANNDC TVRLFDATNF ALLNRFAFHW SVNNISTSPD GKLVAVLGDS 301: PECLLADTGS GKVIHGLEGH LDYSFSSAWH PNGQILATGN QDTTCRLWDV RNLSQSLKVL KGNMGAIRAL RFTSDGRFLA MAEPADFVHL FDTEAGYSQC 401: QEIDLFGEIA GISFSPDTEA LFVGVADRTY GSLLEFNRKR NHSYVDSIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)