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AT3G14440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nine-cis-epoxycarotenoid dioxygenase 3
Curator
Summary (TAIR10)
Encodes 9-<i>cis</i>-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.
Computational
Description (TAIR10)
nine-cis-epoxycarotenoid dioxygenase 3 (NCED3); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 9 (TAIR:AT1G78390.1); Has 2945 Blast hits to 2901 proteins in 493 species: Archae - 16; Bacteria - 796; Metazoa - 281; Fungi - 204; Plants - 893; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14440-MONOMERBioCyc:MetaCyc:AT3G14440-MONOMERBioGrid:6001BRENDA:1.13.11.51
EC:1.13.11.51eggNOG:COG3670eggNOG:KOG1285EMBL:AB026549
EMBL:AB028617EMBL:AY056255EMBL:CP002686EnsemblPlants:AT3G14440
EnsemblPlants:AT3G14440.1entrez:820667GeneID:820667Genevisible:Q9LRR7
GO:GO:0006970GO:GO:0009414GO:GO:0009535GO:GO:0009570
GO:GO:0009688GO:GO:0042538GO:GO:0045549GO:GO:0046872
Gramene:AT3G14440.1gramene_pathway:1.13.11.51gramene_pathway:PWY-695hmmpanther:PTHR10543
hmmpanther:PTHR10543:SF26HOGENOM:HOG000254836InParanoid:Q9LRR7InterPro:IPR004294
iPTMnet:Q9LRR7KEGG:ath:AT3G14440KO:K09840OMA:MFPKAIG
PANTHER:PTHR10543PaxDb:Q9LRR7Pfam:PF03055Pfam:Q9LRR7
PhylomeDB:Q9LRR7PRIDE:Q9LRR7PRO:PR:Q9LRR7ProteinModelPortal:Q9LRR7
Proteomes:UP000006548RefSeq:NP_188062.1SMR:Q9LRR7STRING:3702.AT3G14440.1
TAIR:AT3G14440tair10-symbols:ATNCED3tair10-symbols:NCED3tair10-symbols:SIS7
tair10-symbols:STO1UniGene:At.26346UniProt:Q9LRR7
Coordinates (TAIR10) chr3:-:4831678..4833477
Molecular Weight (calculated) 65860.20 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.28
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)