AT5G52310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOW-TEMPERATURE-INDUCED 78 (LTI78); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.2); Has 4951 Blast hits to 3145 proteins in 397 species: Archae - 10; Bacteria - 1464; Metazoa - 1621; Fungi - 447; Plants - 293; Viruses - 46; Other Eukaryotes - 1070 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21240929..21243326 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77859.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQTEEPPLN THQQHPEEVE HHENGATKMF RKVKARAKKF KNSLTKHGQS NEHEQDHDLV EEDDDDDELE PEVIDAPGVT GKPRETNVPA SEEIIPPGTK 101: VFPVVSSDYT KPTESVPVQE ASYGHDAPAH SVRTTFTSDK EEKRDVPIHH PLSELSDREE SRETHHESLN TPVSLLSGTE DVTSTFAPSG DDEYLDGQRK 201: VNVETPITLE EESAVSDYLS GVSNYQSKVT DPTKEETGGV PEIAESFGNM EVTDESPDQK PGQFERDLST RSKEFKEFDQ DFDSVLGKDS PAKFPGESGV 301: VFPVGFGDES GAELEKDFPT RSHDFDMKTE TGMDTNSPSR SHEFDLKTES GNDKNSPMGF GSESGAELEK EFDQKNDSGR NEYSPESDGG LGAPLGGNFP 401: VRSHELDLKN ESDIDKDVPT GFDGEPDFLA KGRPGYGEAS EEDKFPARSD DVEVETELGR DPKTETLDQF SPELSHPKER DEFKESRDDF EETRDEKTEE 501: PKQSTYTEKF ASMLGYSGEI PVGDQTQVAG TVDEKLTPVN EKDQETESAV TTKLPISGGG SGVEEQRGED KSVSGRDYVA EKLTTEEEDK AFSDMVAEKL 601: QIGGEEEKKE TTTKEVEKIS TEKAASEEGE AVEEEVKGGG GMVGRIKGWF GGGATDEVKP ESPHSVEEAP KSSGWFGGGA TEEVKPKSPH SVEESPQSLG 701: STVVPVQKEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)