AT3G50970.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.805 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : dehydrin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
LOW TEMPERATURE-INDUCED 30 (LTI30); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 2604 Blast hits to 1055 proteins in 149 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 7; Plants - 2511; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:+:18940825..18941406 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 20910.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 193 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNSHQNQTGV QKKGITEKIM EKLPGHHGPT NTGVVHHEKK GMTEKVMEQL PGHHGATGTG GVHHEKKGMT EKVMEQLPGH HGSHQTGTNT TYGTTNTGGV 101: HHEKKSVTEK VMEKLPGHHG SHQTGTNTAY GTNTNVVHHE KKGIAEKIKE QLPGHHGTHK TGTTTSYGNT GVVHHENKST MDKIKEKLPG GHH |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)