AT1G10090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Early-responsive to dehydration stress protein (ERD4) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: lipases;hydrolases, acting on ester bonds (TAIR:AT1G58520.1); Has 1417 Blast hits to 1261 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 691; Plants - 423; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3290572..3295271 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86773.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 762 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVSALLTSA GINIAICVVL VSLYSILRKQ PANYCVYFGR LLSDGRVKRH DPRWYERFAP SPSWLVKAWE TTEEEMLAAA GLDAVVFIRM VICSIRIFSI 101: VAVVCLAFVL PVNYYGQKME HKEVHLESLG VFTIENLNPR SRWLWVHCLS LYIISSAACA LLYFEYKNIA KKRLAHISGS ASKPSHFTVL IRAIPQSPDQ 201: SYSETVSKYF TNYYAPSYVS HLMVYRDGFI HRLMNETERM CQAIKHVSPD LSCNPSLKSC VLCGPAATNS FQIISNETDS VKGLELGELT LTTTEEERPV 301: AFVFFKSRYD ALVVSEVLQT PNPMLWVADL APEPHDVHWR NLRIPYRQLW MRRIATLVGA IAFMFVFLFP VTFVQGLTQL PTLSKNFPFL KDLLNRRFME 401: QVITGYLPSV ILVLFFYTVP PLMMYFSTLE GCVSRSQRKK SACLKILYFT IWNVFFVNIL SGSVIRQFTV LNSVRDVPAQ LAKLVPAQAG FFMTYCFTSG 501: WAGLACEIMQ PVGLIWNLIA KVIVKNKEES YETLRFPYHT EIPRLLLFGL LGFTNSVIAP LILPFLLIYF FFAYLIYKNQ IINVYITKYE SGGQYWPVFH 601: NTTIFSLILS QVIALGFFGL KLSTVASGFT IPLILLTLLF SEYCRQRFAP IFQKYPAEIL IAMDRADEMT GKMEEIHNNL KVAYSQIPTC SEESSKAGCT 701: SPCSDQELPD SEELKPEKEN LKADYIWEFQ RSKSGLDLEV KSCPSASPIR NSPGFAEIYK RT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)