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AT5G08139.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G60820.1); Has 9271 Blast hits to 9218 proteins in 288 species: Archae - 4; Bacteria - 19; Metazoa - 2506; Fungi - 730; Plants - 4517; Viruses - 59; Other Eukaryotes - 1436 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK117658EMBL:AK220636
EMBL:AK221247EMBL:CP002688EnsemblPlants:AT5G08139EnsemblPlants:AT5G08139.1
entrez:830709Gene3D:3.30.40.10GeneID:830709GO:GO:0008270
Gramene:AT5G08139.1hmmpanther:PTHR22763hmmpanther:PTHR22763:SF8InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT5G08139OMA:CKDEMNIPfam:PF13639
Pfscan:PS50089PhylomeDB:Q8GYG0PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_850790.1SMART:SM00184SMR:Q8GYG0SUPFAM:SSF57850
TAIR:AT5G08139UniGene:At.5451UniGene:At.66679UniProt:Q8GYG0
Coordinates (TAIR10) chr5:+:2616487..2617617
Molecular Weight (calculated) 41966.50 Da
IEP (calculated) 3.63
GRAVY (calculated) -0.54
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)