AT1G33520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D111/G-patch domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4; | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
modifier of snc1, 2 (MOS2); CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT4G25020.1); Has 453 Blast hits to 441 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 80; Plants - 100; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12157488..12158876 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51030.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLSFSLPSK SKPKVTATTA DGNNAVDDGT SKEFVTEFDP SKTLANSIPK YVIPPIENTW RPHKKMKNLD LPLQSGNAGS GLEFEPEVPL PGTEKPDNIS 101: YGLNLRQKVK DDSIGGDAVE ERKVSMGEQL MLQSLRRDLM SLADDPTLED FESVPVDGFG AALMAGYGWK PGKGIGKNAK EDVEIKEYKK WTAKEGLGFD 201: PDRSKVVDVK AKVKESVKLD KKGVGINGGD VFFVGKEVRI IAGRDVGLKG KIVEKPGSDF FVIKISGSEE EVKVGVNEVA DLGSKEEEKC LKKLKDLQLN 301: DREKDKKTSG RGRGAERGSR SEVRASEKQD RGQTRERKVK PSWLRSHIKV RIVSKDWKGG RLYLKKGKVV DVVGPTTCDI TMDETQELVQ GVDQELLETA 401: LPRRGGPVLV LSGKHKGVYG NLVEKDLDKE TGVVRDLDNH KMLDVRLDQV AEYMGDMDDI EY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)