AT1G80550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 29244 Blast hits to 10737 proteins in 246 species: Archae - 4; Bacteria - 10; Metazoa - 174; Fungi - 200; Plants - 28041; Viruses - 0; Other Eukaryotes - 815 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:30285358..30286704 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52513.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLLRRLNRV RIASPYSVRL LSVKPISNVD DAKFRSQEEE DQSSYDQKTV CEALTCYSND WQKALEFFNW VERESGFRHT TETFNRVIDI LGKYFEFEIS 101: WALINRMIGN TESVPNHVTF RIVFKRYVTA HLVQEAIDAY DKLDDFNLRD ETSFYNLVDA LCEHKHVVEA EELCFGKNVI GNGFSVSNTK IHNLILRGWS 201: KLGWWGKCKE YWKKMDTEGV TKDLFSYSIY MDIMCKSGKP WKAVKLYKEM KSRRMKLDVV AYNTVIRAIG ASQGVEFGIR VFREMRERGC EPNVATHNTI 301: IKLLCEDGRM RDAYRMLDEM PKRGCQPDSI TYMCLFSRLE KPSEILSLFG RMIRSGVRPK MDTYVMLMRK FERWGFLQPV LYVWKTMKES GDTPDSAAYN 401: AVIDALIQKG MLDMAREYEE EMIERGLSPR RRPELVEKSL DETLVCRE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)