AT3G50080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VIER F-box proteine 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VIER F-box proteine 2 (VFB2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, ubiquitin-dependent protein catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP1/ASK1-interacting protein 2 (TAIR:AT5G67250.1); Has 4306 Blast hits to 2435 proteins in 203 species: Archae - 0; Bacteria - 23; Metazoa - 1627; Fungi - 317; Plants - 1918; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18572788..18574356 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57252.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.34 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 522 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGQAPSSPAE PNVRDTSLCL WSPEFLDCES IGFEDGDYDF TANLPDDCLA HIFQFLSAGD RKRCSLVSKR WLLVDGQNRH RLSLDAKSEI LPFLPCIFNR 101: FDSVTKLALR CDRRSFSLSD EALFIVSIRC SNLIRVKLRG CREITDLGME SFARNCKSLR KLSCGSCTFG AKGINAMLEH CKVLEELSLK RIRGLHELAE 201: PIKLSLSASL RSVFLKELVN GQVFGSLVAT RTLKKVKIIR CLGNWDRVFE MNGNGNSSLT EIRLERLQVT DIGLFGISKC SNLETLHIVK TPDCSNLGLA 301: SVVERCKLLR KLHIDGWRVK RIGDQGLMSV AKHCLNLQEL VLIGVDATYM SLSAIASNCK KLERLALCGS GTIGDAEIGC IAEKCVTLRK FCIKGCLISD 401: VGVQALALGC PKLVKLKVKK CSLVTGEVRE WLRERRMTLV VSMDDDETNG VGLVDGGDQR VLETVVEEEA PPVIDGDGGL GVAGGGRLGL AILKTKLGLL 501: AGRNLVACTL RRWSQSEATS SI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)