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AT4G00231.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 50 (MEE50); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Ataxin-10 domain (InterPro:IPR019156), Armadillo-type fold (InterPro:IPR016024); Has 293 Blast hits to 290 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YBUHeggNOG:KOG2676EMBL:AF069299EMBL:AK118272
EMBL:BT005533EMBL:CP002687EnsemblPlants:AT4G00231EnsemblPlants:AT4G00231.1
entrez:826583Gene3D:1.25.10.10GeneID:826583GO:GO:0009793
Gramene:AT4G00231.1hmmpanther:PTHR13255hmmpanther:PTHR13255:SF0HOGENOM:HOG000239672
IntAct:O81325InterPro:IPR011989InterPro:IPR016024InterPro:IPR019156
KEGG:ath:AT4G00231KO:K19323OMA:DICAWESPfam:PF09759
PhylomeDB:O81325PIR:T01352Proteomes:UP000006548RefSeq:NP_567156.1
STRING:3702.AT4G00231.1SUPFAM:SSF48371TAIR:AT4G00231tair10-symbols:MEE50
UniGene:At.34586UniProt:O81325
Coordinates (TAIR10) chr4:+:97528..99050
Molecular Weight (calculated) 53176.80 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.08
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)