AT5G47790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SMAD/FHA domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19351396..19352579 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39987.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||
| Length | 369 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYGRSGLDRF KKSQTSEPFS VSANPPPVVQ QHLSPEALSG QKTQIGAGQS NWHPPDWAIE PRAGVYSLEV VKDGQILDRI HLDRRRHIFG RQHQTCDFVL 101: DHQSVSRQHA AVVPHKNGSI FVIDLGSAHG TFVANERLTK DTPVELEVGQ SLRFAASTRI YLLRKNSEAL FSRPPPPAEI KLPPPPDASD EEAVVAYNTL 201: LNRYGLSNGE SGGMLGKRKE KTGSEAGVAK RMKKVRVSFR DQLGGELAEI VGMSDGADVE TEPGPINVKE GSLVGKYESL VRVTLIPKGK VKEEKAFTGG 301: TRGGVTDRLQ EAMNMLKRGP KTGIYDDLYG GDSLAKAVGT SWASVSQPAA ETECGGVGEE DDNDDLFGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)