AT1G19480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA glycosylase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G75230.1); Has 4603 Blast hits to 4603 proteins in 1096 species: Archae - 62; Bacteria - 2357; Metazoa - 1; Fungi - 142; Plants - 80; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6744520..6746144 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41898.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEQSPSQPS TQCQSHPQSP KPDTHNLIPP ESTDECLDSA GVSGSIVSST TIDARRITEL GNVSSPPSKI PLRPRKIRKL TLDGDVSGED YKAEDISSSQ 101: VNSPLATDGK SPGKGKLSHL RAITVPRIQA RPLTCEGELE TAIHYLRNAD PLLAALIDVH PPPTFESFKT PFLALIRNIL YQQLAMKAGN SIYTRFVSLC 201: GGENLVVPET VLSLNPQQLR QIGVSGRKAS YLHDLARKYQ NGILSDSAIL NMDEKSLFTM LTMVNGIGSW SVHMFMINSL HRPDVLPVND LGVRKGVQLL 301: YGLDDLPRPS QMEQHCAKWR PYRSVGSWYM WRLIEAKSTS TSAAVAAGVS LPPLEDIQQE HQQQQLMDPL NGVFSIGAWG QS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)