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AT5G26960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.883
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G67480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18029eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AF007270
EMBL:AK175995EMBL:BT010884EMBL:CP002688EnsemblPlants:AT5G26960
EnsemblPlants:AT5G26960.1entrez:832754Gene3D:2.120.10.80GeneID:832754
Genevisible:Q6NPN5Gramene:AT5G26960.1hmmpanther:PTHR24412hmmpanther:PTHR24412:SF121
HOGENOM:HOG000030577InParanoid:Q6NPN5InterPro:IPR001810InterPro:IPR006652
InterPro:IPR015915KEGG:ath:AT5G26960OMA:ELSFWRFPaxDb:Q6NPN5
Pfam:PF00646Pfam:PF01344Pfam:Q6NPN5Pfscan:PS50181
PhylomeDB:Q6NPN5PIR:T01772PRIDE:Q6NPN5PRO:PR:Q6NPN5
PROSITE:PS50181ProteinModelPortal:Q6NPN5Proteomes:UP000006548RefSeq:NP_198048.1
SMART:SM00256SMART:SM00612SMR:Q6NPN5SUPFAM:0052715
SUPFAM:SSF81383TAIR:AT5G26960UniGene:At.30835UniProt:Q6NPN5
Coordinates (TAIR10) chr5:-:9484908..9486149
Molecular Weight (calculated) 45015.90 Da
IEP (calculated) 9.26
GRAVY (calculated) 0.02
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MSENCNSRHF SWLMKSCLPN PSDAKSLVQI HQPSSTAANS SATIASLPDD LLLECISRVP SSSIPSLAVV CRRWSRLLHS PYFLHLRRRL GLLRHSLFAI
101: STVDSGLFAA DLQFQSEIAS WKVSLAVSSR SVGVDGSYGS LSHARAAAIG PRVYVVSRNA VLRYDSWMGT LNLRSPMIFP RKKFAIAVVS GKIYVAGGGG
201: GSEVAAAVEE YDPELNRWEV VTQSARKRYG CIGAAVDGVF YVIGGLKIGN ETSRAVAARA YASSMDLFDV ESRQWLRSRS VPGGGCVVAA CAAVGYVYVL
301: TSHAVELSFW RFDARRRGGN SGFGEWQRLK SPPLPAQVRL DGTVRFSCVG VEDKVAVVQV VGCIDDLLRR SGRGERGIRE SLVLLYDTTE GEWRRAADLP
401: EMITRAACAC VEW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)