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AT2G22120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G11020.1); Has 1371 Blast hits to 1337 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 187; Plants - 354; Viruses - 29; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:BT004029EMBL:BT004982
EMBL:CP002685EnsemblPlants:AT2G22120EnsemblPlants:AT2G22120.1entrez:816746
ExpressionAtlas:Q84K04Gene3D:3.30.40.10GeneID:816746GO:GO:0008270
GO:GO:0016021Gramene:AT2G22120.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF50
HOGENOM:HOG000238057InterPro:IPR011016InterPro:IPR013083InterPro:IPR033275
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-PANTHER:PTHR23012
Pfam:PF12906Pfscan:PS51292PhylomeDB:Q84K04PROSITE:PS51292
Proteomes:UP000006548RefSeq:NP_179802.2SMART:SM00744SMR:Q84K04
STRING:3702.AT2G22120.2SUPFAM:SSF57850TAIR:AT2G22120TMHMM:TMhelix
UniGene:At.47564unipathway:UPA00143UniProt:Q84K04
Coordinates (TAIR10) chr2:+:9394026..9396768
Molecular Weight (calculated) 36134.20 Da
IEP (calculated) 6.02
GRAVY (calculated) 0.27
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MADELELSPL VPPSPMVEPS EIDLEAGGPG EQIQCRICLE TDGRDFIAPC KCKGTSKYVH RDCLDHWRAI KEGFAFAHCT TCKAPYYLRV HSAGDRKWRT
101: LKFRFFVTRD ILSIFLAVQL VIAALAYMVY FIDSYQQSWL RHIWGFDSEV TFYYMCGALL FFALLGLSGC VITCYDRRVR NDLAQPCREL CLCCCQPGIC
201: TDCHLPGTIC MWADCTACTE GCASAVSECG GCLGGAGEAG LPLLFITALV ILGLFTVIGI FYSVLVATMV GQRIWQRHYH ILAKRMLTKE YVVEDVDGEM
301: TGSEWSPPAL PTEHVQQLKT LGLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)