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AT1G11020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.890
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G22120.2); Has 1259 Blast hits to 1258 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 590; Fungi - 144; Plants - 311; Viruses - 11; Other Eukaryotes - 203 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AK117403EMBL:AK176486
EMBL:BT004933EMBL:CP002684EnsemblPlants:AT1G11020EnsemblPlants:AT1G11020.1
entrez:837644Gene3D:3.30.40.10GeneID:837644GO:GO:0008270
GO:GO:0016021Gramene:AT1G11020.1hmmpanther:PTHR23012hmmpanther:PTHR23012:SF54
HOGENOM:HOG000238057InterPro:IPR011016InterPro:IPR013083InterPro:IPR033275
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT1G11020
OMA:PFEDNNSPANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292
PhylomeDB:Q8GYT4PROSITE:PS51292Proteomes:UP000006548RefSeq:NP_563883.1
SMART:SM00744SMR:Q8GYT4STRING:3702.AT1G11020.1SUPFAM:SSF57850
TAIR:AT1G11020TMHMM:TMhelixUniGene:At.27955unipathway:UPA00143
UniProt:Q8GYT4
Coordinates (TAIR10) chr1:+:3676968..3678350
Molecular Weight (calculated) 35989.30 Da
IEP (calculated) 5.75
GRAVY (calculated) 0.03
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQGEVQLQP PDSQKLSDSA PLLGDHTNSS SASPSAASVV AGNSDEIKAE EDLENDASSA PCCRICLEDD SELLGDELIS PCMCKGTQQF VHRSCLDHWR
101: SVKEGFAFSH CTTCKAQFHL RVEPFEDNNS WRRKAKFRLF VARDVLLVFL AVQTVIAVMA GFAYMMDKDG EFRNSFNDDW DRILSKHPIP FYYCIGVISF
201: FVLTGFLGII LHCSALNGND PRMAGCQNCC YGWGVLDCFP ASMEACFALV VVFVVIFAIL GLAYGFLAAT MAIQRIWQRH YHILTKRELT KEYIVEDLHG
301: SYTPPKLDAE HEGRLKMLKL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)