AT1G71190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.605 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : senescence associated gene 18 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
senescence associated gene 18 (SAG18); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ceramidase (InterPro:IPR008901); BEST Arabidopsis thaliana protein match is: Alkaline phytoceramidase (aPHC) (TAIR:AT5G11870.2); Has 182 Blast hits to 182 proteins in 61 species: Archae - 0; Bacteria - 88; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26833597..26834982 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32239.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.00 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKRTMSAWG SAILIFIILM IVTPTIPQSQ AYHNFADQRS FLGIPNFLNV ISNFPFLIIG LIGLILCFYP EDYFSFSLRG EKIGWTCFYI GVAAVAFGSS 101: YYHLHPNDAT LLWDRLPMTI AFTSIMAIFV IERIDEHKGT YSIAPLLLAG LVSILYWRFF DDLRPYALVQ FVPCIVIPLM AILLPPMYTH STYWLWAAGF 201: YLLAKVEEAA DKPIYSWTHH IISGHSLKHL CAAMVPVFLT LMLAKRTVQT ERISLYKTWK KGSEEERFEH SYSNVAVEET R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)