AT2G01735.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.960 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : RING-finger protein for embryogenesis | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a RING-H2 zinc finger protein essential for seed development. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
RING-finger protein for embryogenesis (RIE1); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1); Has 9688 Blast hits to 9662 proteins in 283 species: Archae - 0; Bacteria - 6; Metazoa - 2533; Fungi - 743; Plants - 5052; Viruses - 40; Other Eukaryotes - 1314 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:324499..325895 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40100.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 359 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSSYSSDSTA ARDQHAPLLR PRHDGSFSSS SSSARPTALA VLLGRITGHR APSMLVRETA ARALEERRID WGYSKPVVAA DILWNAALVL ASAVMLVGTV 101: EERPNEPIRV WICVYGLQCL FHVVLVWSEY WRRNSTRRAR DLESYDHEDY NIEYDYEQDS DDNSTTYSFV KRCESINTVI SFIWWIIGFY WVVEGGDKLL 201: GEAPNLYWLS VIFLAIDVFF AVFCVVLACL VGIALCCCLP CIIALLYAVA GTEGVSEAEL GVLPLYKFKA FHSNEKNITG PGKMVPIPIN GLCLATERTL 301: LAEDADCCIC LSSYEDGAEL HALPCNHHFH STCIVKWLKM RATCPLCKYN ILKGTTDQS |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)