AT1G73950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane Fragile-X-F-associated protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G18470.1); Has 2761 Blast hits to 2652 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 1645; Fungi - 8; Plants - 510; Viruses - 253; Other Eukaryotes - 345 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27800126..27804476 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52912.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.50 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNCWRVLKSV QASVAHCFLF SFTLALVLKL DHSITYSWWV VCLPLWAFHA VVARGRFSLP APIAPRNRHW APCHAIVSTP LLIAFELLLC VYLETAYADS 101: PPAVSLKIVF LPLLAFEVII LVDNARMCRA LMPGDEESVN DEAVWEALPH FWVAISMVFF LAATVFTLLK LSGDVAALGW WDLFINFGIA ECFAFLVCTK 201: WSNPVIHRSS RDRETGSSST NIRYLDWNSG LGVFSEDDRN QDTCGLQDIG GHIMKIPLIV FQVVLCMHLE GTPEAAKSIS VPVLFSPLFL LQGVGVLFAA 301: SKLIEKVVLL LRGEDDTGLY FRFLSRAHDC LGFLHHGSRL LGWWSIDEGS REEEARLYFD QESGYNTFCG HPPEIVKKMP KKELAEEVWR LQAALGEQTE 401: ITKFSQQEYE RLQNEKVLCR VCFEREISVV LLPCRHRVLC RNCSDKCKKC PFCRITIEER LPVYDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)