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AT3G07930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA glycosylase superfamily protein; Has 117 Blast hits to 117 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
EC:3.2.2.-eggNOG:ENOG410IXQYeggNOG:ENOG4111HPQEMBL:AC013483
EMBL:AY087374EMBL:BT002799EMBL:BT028919EMBL:CP002686
EnsemblPlants:AT3G07930EnsemblPlants:AT3G07930.1EnsemblPlants:AT3G07930.2EnsemblPlants:AT3G07930.3
entrez:819984ExpressionAtlas:Q0IGK1Gene3D:1.10.340.30GeneID:819984
Genevisible:Q0IGK1GO:GO:0005634GO:GO:0006281GO:GO:0016787
hmmpanther:PTHR15074hmmpanther:PTHR15074:SF0HOGENOM:HOG000119219InParanoid:Q0IGK1
InterPro:IPR011257KEGG:ath:AT3G07930KO:K10801OMA:WHDPWRV
PaxDb:Q0IGK1PhylomeDB:Q0IGK1PRIDE:F4JFQ3PRO:PR:Q0IGK1
ProteinModelPortal:Q0IGK1Proteomes:UP000006548Reactome:R-ATH-110329Reactome:R-ATH-110357
RefSeq:NP_566325.1RefSeq:NP_974252.1RefSeq:NP_974253.1SMR:Q0IGK1
SUPFAM:SSF48150TAIR:AT3G07930UniGene:At.40281UniProt:F4JFQ3
Coordinates (TAIR10) chr3:+:2526720..2528145
Molecular Weight (calculated) 40261.90 Da
IEP (calculated) 7.94
GRAVY (calculated) -0.82
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPPIIYKYK RRKDRRLGRD DDSSVMMTRR RPDSDFIEVS DENRSFALFK EDDEKNRDLG LVDDGSTNLV LQCHDDGCSL EKDNSNSLDD LFSGFVYKGV
101: RRRKRDDFGS ITTSNLVSPQ IADDDDDSVS DSHIERQECS EFHVEVRRVS PYFQGSTVSQ QSKEGCDSDS VCSKEGCSKV QAKVPRVSPY FQASTISQCD
201: SDIVSSSQSG RNYRKGSSKR QVKVRRVSPY FQESTVSEQP NQAPKGLRNY FKVVKVSRYF HADGIQVNES QKEKSRNVRK TPIVSPVLSL SQKTDDVYLR
301: KTPDNTWVPP RSPCNLLQED HWHDPWRVLV ICMLLNKTSD AGSDIRLVWI VY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)