AT4G16470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 33210 Blast hits to 13021 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 34; Plants - 32761; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9287862..9289541 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56801.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 501 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTLISSSLS HKSQCLTICF KLNKLAMVYY TREFQTEASQ TSASGSMFSG NATTILRRML AEKRIGRFQV ENQRKTEKLD KTLKGLCVTG RLKEAVGLLW 101: SSGLQVEPET YAVLLQECKQ RKEYTKGKRI HAQMFVVGFA LNEYLKVKLL ILYALSGDLQ TAGILFRSLK IRDLIPWNAM ISGYVQKGLE QEGLFIYYDM 201: RQNRIVPDQY TFASVFRACS ALDRLEHGKR AHAVMIKRCI KSNIIVDSAL VDMYFKCSSF SDGHRVFDQL STRNVITWTS LISGYGYHGK VSEVLKCFEK 301: MKEEGCRPNP VTFLVVLTAC NHGGLVDKGW EHFYSMKRDY GIEPEGQHYA AMVDTLGRAG RLQEAYEFVM KSPCKEHPPV WGSLLGACRI HGNVKLLELA 401: ATKFLELDPT NGGNYVVFAN GYASCGLREA ASKVRRKMEN AGVKKDPGYS QIELQGEVHR FMKDDTSHRL SEKIYKKVHE MTSFFMDIDY YPDGLDSSCP 501: V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)