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AT5G18950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC068655EMBL:AK117517
EMBL:CP002688EnsemblPlants:AT5G18950EnsemblPlants:AT5G18950.1entrez:832013
GeneID:832013Genevisible:Q8GYM2Gramene:AT5G18950.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF848HOGENOM:HOG000115642InParanoid:Q8GYM2InterPro:IPR002885
KEGG:ath:AT5G18950OMA:WELHKEMPaxDb:Q8GYM2Pfam:PF01535
Pfam:PF13041Pfam:Q8GYM2Pfscan:PS51375PhylomeDB:Q8GYM2
PRIDE:Q8GYM2PRO:PR:Q8GYM2PROSITE:PS51375ProteinModelPortal:Q8GYM2
Proteomes:UP000006548RefSeq:NP_197396.1SMR:Q8GYM2STRING:3702.AT5G18950.1
SUPFAM:SSF81901TAIR:AT5G18950TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.31356UniProt:Q8GYM2
Coordinates (TAIR10) chr5:-:6328519..6329970
Molecular Weight (calculated) 55002.80 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.21
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRGQSYLIS FFRNRTRKNP NTQIRSLTVE SRDCESKPDE QKSAVSYTEM AKTVSTIMRE RQRWQQTLVS DFPSFDFADP LFFGELLKSQ NNVLFSLWFF
101: RWLCSNYDYT PGPVSLNILF GALLDGKAVK AAKSFLDTTG FKPEPTLLEQ YVKCLSEEGL VEEAIEVYNV LKDMGISSSV VTCNSVLLGC LKARKLDRFW
201: ELHKEMVESE FDSERIRCLI RALCDGGDVS EGYELLKQGL KQGLDPGQYV YAKLISGFCE IGNYACMSEV LHTMIAWNHF PSMYIYQKII KGLCMNKKQL
301: EAYCIFKNLK DKGYAPDRVV YTTMIRGFCE KGWLGSARKL WFEMIKKGMR PNEFAYNVMI HGHFKRGEIS LVEAFYNEML RNGYGGTMLS CNTMIKGFCS
401: HGKSDEAFEI FKNMSETGVT PNAITYNALI KGFCKENKVE KGLKLYKELK ALGLKPSGMA YAALVRNLKM SDSVATSLNL EIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)