AT4G35540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;transcription regulators | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;transcription regulators; FUNCTIONS IN: transcription regulator activity, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription, transcription initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Zinc finger, TFIIB-type (InterPro:IPR013137); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16873939..16875522 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59594.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.90 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRCKRCNGSN FERDEDTGNS YCGGCGTLRE YDNYEAQLGG IRGPQGTYIR VGTIGRGSVL DYKDKKIYEA NNLIEETTER LNLGNKTEVI KSMISKLTDG 101: EFGQGEWFPI LIGACCYAVV REEGKGVLSM EEVAYEVGCD LHQLGPMIKR VVDHLDLELR EFDLVGLFTK TVTNSPRLTD VDRDKKEKII KQGTFLMNCA 201: LKWFLSTGRR PMPLVVAVLA FVVQVNGVKV KIDDLAKDAS VSLTTCKTRY KELSEKLVKV AEEVGLPWAK DVTVKNVLKH SGTLFALMEA KSMKKRKQGT 301: GKELVRTDGF CVEDLVMDCL SKESMYCYDD DARQDTMSRY FDVEGERQLS LCNYDDNISE NQLSTKYNEF EDRVCGGTLA KRSQGSSQSM WQRRSVFGMV 401: STENWWKGKS ELSKRLLLKD LLEKDVGLEA LPPSYIKGCV AVERRREKIK AAKLRINAIQ HPSDNVSEGA LSLELEHSKK KRKKGSEIDW EDLVIQTLVL 501: HNVNEEEIEK GHYKTLLDLH VFNSGEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)