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AT2G35540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 8542 Blast hits to 8312 proteins in 1764 species: Archae - 53; Bacteria - 3482; Metazoa - 1739; Fungi - 476; Plants - 1179; Viruses - 0; Other Eukaryotes - 1613 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE0WeggNOG:ENOG410YD1NEMBL:CP002685EnsemblPlants:AT2G35540
EnsemblPlants:AT2G35540.1entrez:818119Gene3D:1.10.287.110GeneID:818119
Gramene:AT2G35540.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF193InParanoid:F4IKR5
InterPro:IPR001623InterPro:IPR024593KEGG:ath:AT2G35540OMA:MESPIAR
PaxDb:F4IKR5Pfam:PF00226Pfam:PF11926Pfscan:PS50076
PRIDE:F4IKR5PRINTS:PR00625PROSITE:PS50076ProteinModelPortal:F4IKR5
Proteomes:UP000006548RefSeq:NP_181097.2SMART:SM00271SMR:F4IKR5
SUPFAM:SSF46565TAIR:AT2G35540UniGene:At.66316UniProt:F4IKR5
Coordinates (TAIR10) chr2:+:14927158..14928930
Molecular Weight (calculated) 67094.70 Da
IEP (calculated) 6.53
GRAVY (calculated) -0.61
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGSDSEVE KESIHHKALA ESSFNCGDLM SALTHARKAL SLSPNTEGLS AMVTAFEIIS SAATVAGGFP EWYKVLKVEP FSHINTIKQQ YRKLALVLHP
101: DKNPYVGCEE GFKLLNEAFR VFSDKVRRTE YDMKLRIRIQ GEMVSGGSGG DETSTFSAVC SGCRSVHKFD RKYLGQNLMC PTCKNSFEAK EVEKEEEGRE
201: NGACTSKIIT YSRRKRPVDS DGESLIKEVE TGEMSQEAAE AINVFEGSDE EDEGMMTLAE MQAVIKRNKS KVNSKITEKD SSGEENMGRE TQKRSLADAS
301: MTETLREMST NAVNNKQEVL KNRKNIKKKK MANHKDLTEI VDLEYVPRVD RKRDRGKLSQ EMYMEDEDFE LYDFDKDRMP RSFKKGQIWA IYDGGDDKMP
401: RSYCLVSEVV SLNPFKVWIS WLDFESEKLI SWMKISSSHM PCGRFRVSEK ALIEQVKPFS HLVNCERAAR EIYQIYPKKG SVWAVYSETN PGLQRRKTRR
501: YEIVVCLTMY TDAYGLSVAY LEKVNDYSNL FKRRDYGYNA VRWVEKEDVA ALLSHQIPAK KLPEDESGAD LKESWVLDLA SVPPDLVSAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)