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AT3G22470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK175328EMBL:AP000731
EMBL:BT010576EMBL:CP002686EnsemblPlants:AT3G22470EnsemblPlants:AT3G22470.1
entrez:821818Gene3D:1.25.40.10GeneID:821818GO:GO:0005739
Gramene:AT3G22470.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF416HOGENOM:HOG000015176
InParanoid:Q6NQ83InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G22470
OMA:MIGRNIIPaxDb:Q6NQ83Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q6NQ83Pfscan:PS51375PhylomeDB:Q6NQ83
PRIDE:Q6NQ83PRO:PR:Q6NQ83PROSITE:PS51375ProteinModelPortal:Q6NQ83
Proteomes:UP000006548RefSeq:NP_188886.1SMR:Q6NQ83STRING:3702.AT3G22470.1
SUPFAM:SSF81901TAIR:AT3G22470TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.64127UniProt:Q6NQ83
Coordinates (TAIR10) chr3:-:7966066..7967925
Molecular Weight (calculated) 69107.60 Da
IEP (calculated) 5.67
GRAVY (calculated) 0.04
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MIQRLIPLNR KASNFTQILE KGTSLLHYSS ITEAKLSYKE RLRNGIVDIK VNDAIDLFES MIQSRPLPTP IDFNRLCSAV ARTKQYDLVL GFCKGMELNG
101: IEHDMYTMTI MINCYCRKKK LLFAFSVLGR AWKLGYEPDT ITFSTLVNGF CLEGRVSEAV ALVDRMVEMK QRPDLVTVST LINGLCLKGR VSEALVLIDR
201: MVEYGFQPDE VTYGPVLNRL CKSGNSALAL DLFRKMEERN IKASVVQYSI VIDSLCKDGS FDDALSLFNE MEMKGIKADV VTYSSLIGGL CNDGKWDDGA
301: KMLREMIGRN IIPDVVTFSA LIDVFVKEGK LLEAKELYNE MITRGIAPDT ITYNSLIDGF CKENCLHEAN QMFDLMVSKG CEPDIVTYSI LINSYCKAKR
401: VDDGMRLFRE ISSKGLIPNT ITYNTLVLGF CQSGKLNAAK ELFQEMVSRG VPPSVVTYGI LLDGLCDNGE LNKALEIFEK MQKSRMTLGI GIYNIIIHGM
501: CNASKVDDAW SLFCSLSDKG VKPDVVTYNV MIGGLCKKGS LSEADMLFRK MKEDGCTPDD FTYNILIRAH LGGSGLISSV ELIEEMKVCG FSADSSTIKM
601: VIDMLSDRRL DKSFLDMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)