AT1G30290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
unknown protein | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 53503 Blast hits to 14133 proteins in 285 species: Archae - 8; Bacteria - 48; Metazoa - 606; Fungi - 664; Plants - 50511; Viruses - 0; Other Eukaryotes - 1666 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10670320..10672740 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91816.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 806 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSLRVNRLL RKPLIRFSPC ISSNGEASFS TSSSKHPHGP EIEGDSSSQE DDHFGEFRQL GFGKSSALNA TSVGDPEFGE IRNPRFNEID ELGEDDDDEE 101: GNVTSGDELD DDNDGFAVLK SIPQSREEAG RFDVEEDESR HPLVREVGRL IGLRSSWNPK HEGQMRNLLR SLKPSQVCAV LRSQDDERVA LKFFYWADRQ 201: WRYRHDPMVY YSMLEVLSKT KLCQGSRRVL VLMKRRGIYR TPEAFSRVMV SYSRAGQLRD ALKVLTLMQR AGVEPNLLIC NTTIDVFVRA NRLEKALRFL 301: ERMQVVGIVP NVVTYNCMIR GYCDLHRVEE AIELLEDMHS KGCLPDKVSY YTIMGYLCKE KRIVEVRDLM KKMAKEHGLV PDQVTYNTLI HMLTKHDHAD 401: EALWFLKDAQ EKGFRIDKLG YSAIVHALCK EGRMSEAKDL INEMLSKGHC PPDVVTYTAV VNGFCRLGEV DKAKKLLQVM HTHGHKPNTV SYTALLNGMC 501: RTGKSLEARE MMNMSEEHWW SPNSITYSVI MHGLRREGKL SEACDVVREM VLKGFFPGPV EINLLLQSLC RDGRTHEARK FMEECLNKGC AINVVNFTTV 601: IHGFCQNDEL DAALSVLDDM YLINKHADVF TYTTLVDTLG KKGRIAEATE LMKKMLHKGI DPTPVTYRTV IHRYCQMGKV DDLVAILEKM ISRQKCRTIY 701: NQVIEKLCVL GKLEEADTLL GKVLRTASRS DAKTCYALME GYLKKGVPLS AYKVACRMFN RNLIPDVKMC EKLSKRLVLK GKVDEADKLM LRLVERGHIS 801: PQSLKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)