AT3G06910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UB-like protease 1A | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. In vitro assays suggest that this enzyme is active against SUMO1 and SUMO2. It has weak activity with SUMO3 and cannot act on SUMO5. The N-terminal regulatory region of this protein is required for full activity. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UB-like protease 1A (ULP1A); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1394 Blast hits to 1393 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 593; Fungi - 272; Plants - 373; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2178905..2181188 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58172.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNQSRVLNS ELGDFDLSVL WDQILNFEGY GSYCFRPMDM DGYHKRSAGL NPCKHSGFSH SSRPMAPGIY RYPEVKSSLR RQVHAPVRIL NSGRDRSTRQ 101: GSGNVLGTFL TRNNDMWKRN ALDSSLRYRT DREVIDVDDE LGDVEMISDD TSREGVENVA MEVDEVEEKA EMGNGLFSEV ASLKNGSLRV GECSKANSSS 201: LVVNRPVTDV TSFEAYRKVL ESAVNRTSKL KDRGFVDFFK ERGRALLRSL SSFWRQDEEP VEVVQREAFV PLSREEETAV RRAFSANDSN ILVTHKNSNI 301: DITGKILRCL KPGKWLNDEV INLYMVLLKE REAREPKKFL KCHFFNTFFF TKLVNSATGY NYGAVRRWTS MKRLGYHLKD CDKIFIPIHM NIHWTLAVIN 401: IKDQKFQYLD SFKGREPKIL DALARYFVDE VRDKSEVDLD VSRWRQEFVQ DLPMQRNGFD CGMFMVKYID FYSRGLDLCF TQEQMPYFRA RTAKEILQLK 501: AE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)