AT2G23520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G37100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10014256..10016943 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100056.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||
| Length | 895 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHFPLWKQIH HCATLILDKS KSRRRDGSDS PIDVRRKASM LRKLYEDKLR DALEEASENG SLFKSQDVEN ENQDESLGRS RSLARLHAQR EFLRATALAA 101: ERAFESEDDI PELLEAFNKF LTMYPKFETS EKVDQLRSDE YGHLLDSKVC LDYCGFGLFS YVQTLHYWDS CTFSLSEITA NLSNHALYGG AEIGTVEHDL 201: KTRIMDYLNI PESEYGLVFT GSRGSAFRLL AESYPFHTNK RLLTMFDHES QSVNWMAQTA REKGAKAYNA WFKWPTLKLC STDLKKRLSH KKRKKKDSAV 301: GLFVFPAQSR VTGSKYSYQW MALAQQNNWH VLLDAGSLGP KDMDSLGLSL FRPEFIITSF YKVFGHDPTG FGCLLIKKSV MGNLQSQSGK TGSGIVKITP 401: QYPLYLSDSI DGLDGLVGLE DHDIGTNGDK PATTDAARRG AQMPVFSGAY TSAQVRDVFE TDLLEDNASD RDGTSSTIFE ENESVSVGEL MKSPAFSEDE 501: SSDNSFWIDL GQSPLGSDSA GHLNHHKIAS PLPPFWFTSK RQSPKPVAKS YSSPMYDGKD VLSFDAAVMS VTQEINSTPS RNLRNSNNLQ IQEIQEENCG 601: NIVYRAGSGF GSNGSSSKIS SDMKDNAIRR ETEGEFRLLG RRGTGGRLLG LEDEQPSRGT RVSFNMDRVS HSLDQGEASL ASVYDESDGE NPNEDDWDRR 701: EPEIVCSHID HVNMLGLNKT TSRLRFLINW LVISLLQLKV PEPGSDGSSR YMNLVQIYGP KIKYERGAAV AFNVKDKSKG FVSPEIVLKL AEREGVSLGI 801: GILSHIRIMD LPRNHRGGAR IKEDSSLHLQ REAGKRGGKN GFVRFEVVTA SLSFLSNFED VYKLWAFVAK FLNPGFSREG SLPTVIEEEA EDSET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)