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AT1G73100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SU(VAR)3-9 homolog 3
Curator
Summary (TAIR10)
Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.
Computational
Description (TAIR10)
SU(VAR)3-9 homolog 3 (SUVH3); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 1 (TAIR:AT5G04940.2); Has 4599 Blast hits to 4427 proteins in 402 species: Archae - 0; Bacteria - 285; Metazoa - 2284; Fungi - 494; Plants - 1115; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G73100-MONOMERBioGrid:28860EC:2.1.1.43eggNOG:COG2940
eggNOG:COG3440eggNOG:KOG1082EMBL:AC008017EMBL:AF344446
EMBL:AY099620EMBL:BT002137EMBL:CP002684EnsemblPlants:AT1G73100
EnsemblPlants:AT1G73100.1entrez:843641Gene3D:2.30.280.10GeneID:843641
Genevisible:Q9C5P4GO:GO:0000775GO:GO:0003677GO:GO:0005634
GO:GO:0005694GO:GO:0008270GO:GO:0018024GO:GO:0040029
GO:GO:0042054Gramene:AT1G73100.1hmmpanther:PTHR22884hmmpanther:PTHR22884:SF383
HOGENOM:HOG000238382InParanoid:Q9C5P4IntAct:Q9C5P4InterPro:IPR001214
InterPro:IPR003105InterPro:IPR003616InterPro:IPR007728InterPro:IPR015947
InterPro:IPR025794KEGG:ath:AT1G73100KO:K11420MINT:MINT-8068307
OMA:NHYDKSIPaxDb:Q9C5P4Pfam:PF00856Pfam:PF02182
Pfam:PF05033Pfam:Q9C5P4Pfscan:PS50280Pfscan:PS50867
Pfscan:PS50868Pfscan:PS51015Pfscan:PS51575PhylomeDB:Q9C5P4
PIR:F96756PRIDE:Q9C5P4PRO:PR:Q9C5P4PROSITE:PS50280
PROSITE:PS50867PROSITE:PS50868PROSITE:PS51015PROSITE:PS51575
ProteinModelPortal:Q9C5P4Proteomes:UP000006548RefSeq:NP_565056.1SMART:SM00317
SMART:SM00466SMART:SM00468SMR:Q9C5P4STRING:3702.AT1G73100.1
SUPFAM:SSF82199SUPFAM:SSF88697TAIR:AT1G73100tair10-symbols:SDG19
tair10-symbols:SUVH3UniGene:At.11687UniGene:At.43232UniProt:Q9C5P4
Coordinates (TAIR10) chr1:+:27491970..27493979
Molecular Weight (calculated) 73442.60 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.52
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)