suba logo
AT5G51280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD-box protein abstrakt, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD-box protein abstrakt, putative; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G33370.1); Has 46358 Blast hits to 45535 proteins in 3129 species: Archae - 906; Bacteria - 23651; Metazoa - 6388; Fungi - 4930; Plants - 2690; Viruses - 10; Other Eukaryotes - 7783 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2610-MONOMERBioGrid:20447DNASU:835202EC:3.6.4.13
eggNOG:ENOG410XQQCeggNOG:KOG0341EMBL:AB023044EMBL:AK226380
EMBL:CP002688EnsemblPlants:AT5G51280EnsemblPlants:AT5G51280.1entrez:835202
Gene3D:3.40.50.300Gene3D:4.10.60.10GeneID:835202Genevisible:Q9LU46
GO:GO:0003723GO:GO:0004386GO:GO:0005524GO:GO:0008270
Gramene:AT5G51280.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF266HOGENOM:HOG000268792
InParanoid:Q9LU46InterPro:IPR001650InterPro:IPR001878InterPro:IPR011545
InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT5G51280
KO:K13116ncoils:CoilOMA:PITTAWRPaxDb:Q9LU46
Pfam:PF00098Pfam:PF00270Pfam:PF00271Pfam:Q9LU46
Pfscan:PS50158Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q9LU46PRIDE:Q9LU46PRO:PR:Q9LU46PROSITE:PS50158
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9LU46
Proteomes:UP000006548RefSeq:NP_199941.1SMART:SM00343SMART:SM00487
SMART:SM00490SMR:Q9LU46STRING:3702.AT5G51280.1SUPFAM:SSF52540
SUPFAM:SSF57756TAIR:AT5G51280UniGene:At.29686UniProt:Q9LU46
Coordinates (TAIR10) chr5:+:20841456..20843645
Molecular Weight (calculated) 65810.30 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.20
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)