AT1G50380.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.936 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Prolyl oligopeptidase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:18662480..18666185 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80943.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAESRSPPVA KKVEHVMEMF GDVRVDNYYW LRDDSRTNPD MLSYLREENH YTDFVMSGTK QFENQLFAEI RGRIKEDDIS APLRKGPYYY YEKNLQGKEY 101: IQHCRRLITD NKAEPSVYDT MPTGPDAPPE HVILDENTKA QEHDYYRIGA FKASPDHKLV AYAEDTKGDE IYTVNVIDSE ALKPVGQQLK GLTSYLEWAG 201: NDALLYITMD EILRPDKVWL HKLGTEQSSD VCLYHEKDDM FSLELHASES HKYLFVASES KTTRFVFSLD VSKTQDGLRV LTPRVDGIDS SVSHRGNHFF 301: IQRRSTEFYN SELIACPVDD TSKTTVLLPH RESVKIQEIQ LFRDHLAVFE RENGLQKITV HRLPAEGQPL EGLQGGRNVS FVDPVYSVDS TESEFSSRVL 401: RFKYCSMKTP PSVYDYDMDS GTSVVKKIDT VLGGFDASNY VTERKWVAAS DGTQIPMSIV YNKKLAKLDG SDPLLLYGYG SYEISVDPYF KASRLSLLDR 501: GFTFVIAHVR GGGEMGRQWY ENGKLLKKKN TFTDFIACAE RLIELKYCSK EKLCMEGRSA GGLLMGAVVN MRPDLFKVVI AGVPFVDVLT TMLDPTIPLT 601: TSEWEEWGDP RKEEFYFYMK SYSPVDNVTA QNYPNMLVTA GLNDPRVMYS EPGKWVAKLR EMKTDNNVLL FKCELGAGHF SKSGRFEKLQ EDAFTFAFMM 701: KVLDMIPASG |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)