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AT5G13680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IKI3 family protein
Curator
Summary (TAIR10)
A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.
Computational
Description (TAIR10)
ABA-OVERLY SENSITIVE 1 (ABO1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), IKI3 (InterPro:IPR006849); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5290eggNOG:KOG1920EMBL:AB006704EMBL:CP002688
EnsemblPlants:AT5G13680EnsemblPlants:AT5G13680.1entrez:831213Gene3D:2.130.10.10
GeneID:831213Genevisible:Q9FNA4GO:GO:0005634GO:GO:0005829
GO:GO:0006351GO:GO:0006355GO:GO:0006400GO:GO:0006979
GO:GO:0008283GO:GO:0008284GO:GO:0009734GO:GO:0009737
GO:GO:0009738GO:GO:0009787GO:GO:0009965GO:GO:0010928
GO:GO:0016746GO:GO:0031538GO:GO:0033588GO:GO:0035265
GO:GO:0048530GO:GO:0071215GO:GO:0080178GO:GO:2000024
Gramene:AT5G13680.1hmmpanther:PTHR12747HOGENOM:HOG000242374InParanoid:Q9FNA4
InterPro:IPR006849InterPro:IPR015943iPTMnet:Q9FNA4KEGG:ath:AT5G13680
KO:K11373OMA:HTYEVSLPANTHER:PTHR12747PaxDb:Q9FNA4
Pfam:PF04762Pfam:Q9FNA4PhylomeDB:Q9FNA4PIRSF:PIRSF017233
PRIDE:Q9FNA4PRO:PR:Q9FNA4ProteinModelPortal:Q9FNA4Proteomes:UP000006548
RefSeq:NP_196872.1SMR:Q9FNA4STRING:3702.AT5G13680.1SUPFAM:0047732
TAIR:AT5G13680tair10-symbols:ABO1tair10-symbols:ELO2UniGene:At.6476
UniProt:Q9FNA4
Coordinates (TAIR10) chr5:-:4410522..4415471
Molecular Weight (calculated) 146634.00 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.11
Length 1319 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKNLKLFSEV PQNIQLHSTE EVVQFAAYDI DQSRLFFASS ANFVYALQLS SFQNESAGAK SAMPVEVCSI DIEPGDFITA FDYLAEKESL LIGTSHGLLL
0101: VHNVESDVTE LVGNIEGGVK CISPNPTGDL LGLITGLGQL LVMTYDWALM YEKALGEVPE GGYVRETNDL SVNCGGISIS WRGDGKYFAT MGEVYESGCM
0201: SKKIKIWESD SGALQSSSET KEFTQGILEW MPSGAKIAAV YKRKSDDSSP SIAFFERNGL ERSSFRIGEP EDATESCENL KWNSASDLLA GVVSCKTYDA
0301: IRVWFFSNNH WYLKQEIRYP REAGVTVMWD PTKPLQLICW TLSGQVSVRH FMWVTAVMED STAFVIDNSK ILVTPLSLSL MPPPMYLFSL SFSSAVRDIA
0401: YYSRNSKNCL AVFLSDGNLS FVEFPAPNTW EDLEGKDFSV EISDCKTALG SFVHLLWLDV HSLLCVSAYG SSHNKCLSSG GYDTELHGSY LQEVEVVCHE
0501: DHVPDQVTCS GFKASITFQT LLESPVLALA WNPSKRDSAF VEFEGGKVLG YASRSEIMET RSSDDSVCFP STCPWVRVAQ VDASGVHKPL ICGLDDMGRL
0601: SINGKNLCNN CSSFSFYSEL ANEVVTHLII LTKQDFLFIV DTKDVLNGDV ALGNVFFVID GRRRDEENMS YVNIWERGAK VIGVLNGDEA AVILQTMRGN
0701: LECIYPRKLV LSSITNALAQ QRFKDAFNLV RRHRIDFNVI VDLYGWQAFL QSAVAFVEQV NNLNHVTEFV CAMKNEDVTE TLYKKFSFSK KGDEVFRVKD
0801: SCSNKVSSVL QAIRKALEEH IPESPSRELC ILTTLARSDP PAIEESLLRI KSVREMELLN SSDDIRKKSC PSAEEALKHL LWLLDSEAVF EAALGLYDLN
0901: LAAIVALNSQ RDPKEFLPYL QELEKMPESL MHFKIDIKLQ RFDSALRNIV SAGVGYFPDC MNLIKKNPQL FPLGLLLITD PEKKLVVLEA WADHLIDEKR
1001: FEDAATTYLC CCKLEKASKA YRECGDWSGV LRVGALMKLG KDEILKLAYE LCEEVNALGK PAEAAKIALE YCSDISGGIS LLINAREWEE ALRVAFLHTA
1101: DDRISVVKSS ALECASGLVS EFKESIEKVG KYLTRYLAVR QRRLLLAAKL KSEERSVVDL DDDTASEASS NLSGMSAYTL GTRRGSAASV SSSNATSRAR
1201: DLRRQRKSGK IRAGSAGEEM ALVDHLKGMR MTDGGKRELK SLLICLVTLG EMESAQKLQQ TAENFQVSQV AAVELAHDTV SSESVDEEVY CFERYAQKTR
1301: STARDSDAFS WMLKVFISP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)