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AT4G31180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.970
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:15157177 (2004): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT4G26870.1); Has 27000 Blast hits to 21362 proteins in 2984 species: Archae - 448; Bacteria - 18821; Metazoa - 751; Fungi - 935; Plants - 402; Viruses - 0; Other Eukaryotes - 5643 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G31180-MONOMERBioCyc:ARA:GQT-63-MONOMEREC:6.1.1.12eggNOG:COG0017
eggNOG:KOG0556EMBL:AK317607EMBL:AL161578EMBL:AY072331
EMBL:BT002567EMBL:CP002687EnsemblPlants:AT4G31180EnsemblPlants:AT4G31180.1
EnsemblPlants:AT4G31180.2entrez:829246Gene3D:2.40.50.140GeneID:829246
Genevisible:Q9M084GO:GO:0003677GO:GO:0004815GO:GO:0005524
GO:GO:0005783GO:GO:0005829GO:GO:0006422GO:GO:0046686
GO:GO:0046872GO:GO:0050832Gramene:AT4G31180.1Gramene:AT4G31180.2
gramene_pathway:6.1.1.12gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR22594hmmpanther:PTHR22594:SF33
HOGENOM:HOG000226032InterPro:IPR002312InterPro:IPR004364InterPro:IPR004365
InterPro:IPR004523InterPro:IPR006195InterPro:IPR012340InterPro:IPR018150
KEGG:ath:AT4G31180KO:K01876ncoils:CoilOMA:MEIRKHY
PANTHER:PTHR22594PANTHER:PTHR22594:SF33PaxDb:Q9M084Pfam:PF00152
Pfam:PF01336Pfscan:PS50862PhylomeDB:Q9M084PIR:T10672
PRINTS:PR01042PRO:PR:Q9M084PROSITE:PS50862ProteinModelPortal:Q9M084
Proteomes:UP000006548RefSeq:NP_194847.3RefSeq:NP_849558.1SMR:Q9M084
STRING:3702.AT4G31180.1SUPFAM:SSF50249SUPFAM:SSF55681TAIR:AT4G31180
TIGRfam:TIGR00458TIGRFAMs:TIGR00458UniGene:At.4593UniProt:Q9M084
Coordinates (TAIR10) chr4:+:15156696..15159362
Molecular Weight (calculated) 62921.20 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.39
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)