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AT3G05675.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.806
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10800.1); Has 259 Blast hits to 259 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDYVeggNOG:ENOG410XSQ4EMBL:AC011620EMBL:AK229544
EMBL:AY084926EMBL:AY091003EMBL:CP002686EnsemblPlants:AT3G05675
EnsemblPlants:AT3G05675.1EnsemblPlants:AT3G05675.2entrez:819735GeneID:819735
Genevisible:Q8RX01GO:GO:0016567Gramene:AT3G05675.1Gramene:AT3G05675.2
hmmpanther:PTHR31060hmmpanther:PTHR31060:SF7HOGENOM:HOG000241670InParanoid:Q8RX01
InterPro:IPR000210InterPro:IPR011333KEGG:ath:AT3G05675OMA:RYCVEVY
PaxDb:Q8RX01Pfam:PF00651Pfam:Q8RX01Pfscan:PS50097
PhylomeDB:Q8RX01PRIDE:Q8RX01PRO:PR:Q8RX01PROSITE:PS50097
ProteinModelPortal:Q8RX01Proteomes:UP000006548RefSeq:NP_566255.1RefSeq:NP_850518.1
SUPFAM:SSF54695TAIR:AT3G05675UniGene:At.40629UniPathway:UPA00143
UniProt:Q8RX01
Coordinates (TAIR10) chr3:-:1658425..1659859
Molecular Weight (calculated) 50270.30 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.09
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPRDNQAEA SYTFGDRSSS DIVVRLRNEE GRDDWIYCHS KILSEKSQYF ADRLSDKWPT CKILDSRYCV EVICQESDYD HHINLLRLLY VVSDDVHEDN
101: LCHNVKSALG ILSVAKELSC PQIVTACVNY LEAVPWEEGE EEEILRIVPR IGSEAEPILA RLQPVDQSAV LEIFVSAFRF ATSSPPLLLG DIKSSAQEQI
201: EYMITEDDDA PLLIADEEVK LEVKQCVKSL FVRFFQCLEE ITLKPVESEV INKKGSFRMV LSDMCWVFQI LTKMEVVRDF VITWADISEK LVKVVEQLET
301: TVVEAVEIRV KVIEVTAKVI EAIGYGTVIL PTAKRLQMVK LWLPFVRNTK PLVDSPVRED EENDTVRYKI DGEIWQALES SFVSIILALP SADQAEILTE
401: WLSKNGLYPD LTEAFEVWCY RSKVAKRRLG LVGGEEENGM S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)