AT1G29710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G34370.1); Has 17079 Blast hits to 9820 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 16965; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10387673..10389100 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53816.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRLWCGKLR LWKPYLALAT QSRNSWFCSG GGAPSHHLHI LKKYGSSEIT EMINRYKRNV AGHTLTQNSM VGQYKTTVSP SVAQNVTIET FDSLCIQGNW 101: REAVEVLDYL ENKGYAMDLI RLLGLAKLCG KPEALEAARV VHECIIALVS PCDVGARNAI IEMYSGCCSV DDALKVFEEM PEWNSGTLCV MMRCFVNNGY 201: GEEAIDLFTR FKEEGNKPNG EIFNQVFSTC TLTGDVKEGS LQFQAMYREY GIVPSMEHYH SVTKMLATSG HLDEALNFVE RMPMEPSVDV WETLMNLSRV 301: HGDVELGDRC AELVEKLDAT RLDKVSSAGL VATKASDFVK KEPSTRSEPY FYSTFRPVDS SHPQMNIIYE TLMSLRSQLK EMGYVPDTRY YRSLIMAMEN 401: KEQIFGYREE IAVVESLLKS KPRSAITLLT NIRIVGDCHD MMKLMSVITG RDMIKRDAKI YHLFKNGVCR CNNLW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)