AT4G26980.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNI-like superfamily protein; Has 687 Blast hits to 557 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 15; Plants - 236; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:13548813..13550644 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 38125.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.65 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEKLPKSLK NLDLNTNRGR GPENKILVSA YVSSSRMSPL KSKPPSLVSS CLGVIGKHLE DMIRCLAEIS VIFPADIKMS IAAIARRKKL LDDDVIICLA 101: DSSWEILDVS GSDVTNFGLA KVAEICKSLR AVDISRCNKI SSMGVLELVQ HCRSLETLRC GGCPSSESTA RRSLSIFKPN LSNVEGETWE EIDTSEIGHG 201: GQSLRWLVWP RIDKDSLEML SSECPRIVVN PKPSLVAYRA DEVPREALPD VALDEPFVKD IDPKTWVVTG VVQKPTSFPL SNELSIAEKF RLAFAERDAR 301: MAPKRAKNAR QRQRRAERDW MMSSDEAKAM VFASKATRSL HKS |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)