AT4G09340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.830 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SPla/RYanodine receptor (SPRY) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 1270 Blast hits to 1182 proteins in 217 species: Archae - 0; Bacteria - 1; Metazoa - 551; Fungi - 310; Plants - 183; Viruses - 1; Other Eukaryotes - 224 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:5925015..5927597 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50196.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNKSNFIHKF HHSAKPHTME DNEEEEESPT ELNTITGLSG FVVISPDKLS LKYTGVSQHG HDVGVVQANK PAPCKRFAYY FEIYVKDAGV KGRVSIGFTT 101: NSFRIARHPG WELNTCGYHG EDGLIYLGKR QGEAFGPTYT TGDTVGGGIN YDSQEFFFTV NGTLVGTVSK YIKGPLFPTV AVHSQNEEVT VNFGQEKFAF 201: DFKGYESSER NKQQIAIEKI SIPSNMSLGL VKNYLLHYGY EETHHALDLA TNSTLPPING AQENGIDDTS YALHERKILR QLIRKGEIDA ALAKLRDSYP 301: QLVQNDKSEV CFLLHCQKFI ELVRIGALEE AVKYGRMELA KFIGLTTFQD ILEDCFALLV YERPEESNVG YFLEETQREV VADTVNAAIL STKPKGKNQS 401: HSHLETLLRQ LTACCLELRS LNDGQGEAFS LNRLLRTNNW KRTKKTT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)