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AT4G09340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.830
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPla/RYanodine receptor (SPRY) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT1G35470.2); Has 1270 Blast hits to 1182 proteins in 217 species: Archae - 0; Bacteria - 1; Metazoa - 551; Fungi - 310; Plants - 183; Viruses - 1; Other Eukaryotes - 224 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPCCeggNOG:KOG1477EMBL:AY039919EMBL:AY096612
EMBL:CP002687EnsemblPlants:AT4G09340EnsemblPlants:AT4G09340.1entrez:826516
GeneID:826516Gramene:AT4G09340.1hmmpanther:PTHR12864hmmpanther:PTHR12864:SF14
HOGENOM:HOG000012740IntAct:Q94BS7InterPro:IPR001870InterPro:IPR003877
InterPro:IPR006594InterPro:IPR006595InterPro:IPR013144InterPro:IPR013320
InterPro:IPR024964KEGG:ath:AT4G09340OMA:GWELNTCPfam:PF00622
Pfam:PF10607Pfscan:PS50188Pfscan:PS50896Pfscan:PS50897
PhylomeDB:Q94BS7PROSITE:PS50188PROSITE:PS50896PROSITE:PS50897
Proteomes:UP000006548RefSeq:NP_192672.2SMART:SM00449SMART:SM00668
SMART:SM00757SMR:Q94BS7STRING:3702.AT4G09340.1SUPFAM:SSF49899
TAIR:AT4G09340UniGene:At.3710UniProt:Q94BS7
Coordinates (TAIR10) chr4:-:5925015..5927597
Molecular Weight (calculated) 50196.40 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.43
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKSNFIHKF HHSAKPHTME DNEEEEESPT ELNTITGLSG FVVISPDKLS LKYTGVSQHG HDVGVVQANK PAPCKRFAYY FEIYVKDAGV KGRVSIGFTT
101: NSFRIARHPG WELNTCGYHG EDGLIYLGKR QGEAFGPTYT TGDTVGGGIN YDSQEFFFTV NGTLVGTVSK YIKGPLFPTV AVHSQNEEVT VNFGQEKFAF
201: DFKGYESSER NKQQIAIEKI SIPSNMSLGL VKNYLLHYGY EETHHALDLA TNSTLPPING AQENGIDDTS YALHERKILR QLIRKGEIDA ALAKLRDSYP
301: QLVQNDKSEV CFLLHCQKFI ELVRIGALEE AVKYGRMELA KFIGLTTFQD ILEDCFALLV YERPEESNVG YFLEETQREV VADTVNAAIL STKPKGKNQS
401: HSHLETLLRQ LTACCLELRS LNDGQGEAFS LNRLLRTNNW KRTKKTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)