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AT5G52880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20610DNASU:835365eggNOG:ENOG410IWBJeggNOG:ENOG411229F
EMBL:AB009055EMBL:AY054282EMBL:AY132006EMBL:CP002688
EnsemblPlants:AT5G52880EnsemblPlants:AT5G52880.1entrez:835365GeneID:835365
Genevisible:Q9FLX3Gramene:AT5G52880.1hmmpanther:PTHR20995hmmpanther:PTHR20995:SF21
HOGENOM:HOG000070713InParanoid:Q9FLX3IntAct:Q9FLX3InterPro:IPR001810
KEGG:ath:AT5G52880OMA:YAEQETWPaxDb:Q9FLX3Pfam:PF12937
Pfam:Q9FLX3Pfscan:PS50181PhylomeDB:Q9FLX3PRIDE:Q9FLX3
PRO:PR:Q9FLX3PROSITE:PS50181ProteinModelPortal:Q9FLX3Proteomes:UP000006548
RefSeq:NP_568779.1SMART:SM00256STRING:3702.AT5G52880.1SUPFAM:SSF81383
TAIR:AT5G52880UniGene:At.8898UniProt:Q9FLX3
Coordinates (TAIR10) chr5:-:21432002..21433695
Molecular Weight (calculated) 30705.60 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.32
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRYQNLKVG EAFSKNRIYP FACNELSSIL NLAYSLSPKN VKALIFQDTL SAFRLLPDIN TSAAVSAANL LLKSVEAVLP KQKKNLAIVE FKQAKVALKR
101: RSKNREEEDI DIPSLPQDIL IHIFSFLEIS SLVSSAQVSR SWNQATHENS LWQSQFDLHF NHKVLIRMQS DIDWREAFKK AYIAANSSEA LRSGRGYCSY
201: CDSIVWHENL RCLNKQCRLK SGNKPLDLIT THQVVNYLLG IESSDDESES DDEAFPGRLW KLSYVPDYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)