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AT2G22430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox protein 6
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein that is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis.
Computational
Description (TAIR10)
homeobox protein 6 (HB6); FUNCTIONS IN: protein binding, sequence-specific DNA binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, positive regulation of transcription, abscisic acid mediated signaling pathway, negative regulation of abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 10935 Blast hits to 10899 proteins in 558 species: Archae - 5; Bacteria - 20; Metazoa - 8544; Fungi - 195; Plants - 1932; Viruses - 5; Other Eukaryotes - 234 (source: NCBI BLink).
Protein Annotations
BioGrid:2128eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC006592
EMBL:AF104900EMBL:AY060569EMBL:AY063819EMBL:AY094457
EMBL:AY122903EMBL:CP002685EMBL:X67034EnsemblPlants:AT2G22430
EnsemblPlants:AT2G22430.1entrez:816775Gene3D:1.10.10.60GeneID:816775
Genevisible:P46668GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009414GO:GO:0009738GO:GO:0009788
GO:GO:0043565GO:GO:0045893Gramene:AT2G22430.1hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF196HOGENOM:HOG000006025InParanoid:P46668InterPro:IPR000047
InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057InterPro:IPR017970
KEGG:ath:AT2G22430KO:K09338MINT:MINT-8064228ncoils:Coil
OMA:RRLSINQPaxDb:P46668Pfam:P46668Pfam:PF00046
Pfam:PF02183Pfscan:PS50071PhylomeDB:P46668PIR:E84612
PIR:S47136PRIDE:P46668PRINTS:PR00031PRO:PR:P46668
PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:P46668Proteomes:UP000006548
RefSeq:NP_565536.1scanprosite:PS00027SMART:SM00389SMR:P46668
STRING:3702.AT2G22430.1SUPFAM:SSF46689TAIR:AT2G22430tair10-symbols:ATHB6
tair10-symbols:HB6UniGene:At.25257UniProt:P46668
Coordinates (TAIR10) chr2:-:9526470..9527612
Molecular Weight (calculated) 35019.30 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.80
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKRLSSSDS VGGLISLCPT TSTDEQSPRR YGGREFQSML EGYEEEEEAI VEERGHVGLS EKKRRLSINQ VKALEKNFEL ENKLEPERKV KLAQELGLQP
101: RQVAVWFQNR RARWKTKQLE KDYGVLKTQY DSLRHNFDSL RRDNESLLQE ISKLKTKLNG GGGEEEEEEN NAAVTTESDI SVKEEEVSLP EKITEAPSSP
201: PQFLEHSDGL NYRSFTDLRD LLPLKAAASS FAAAAGSSDS SDSSALLNEE SSSNVTVAAP VTVPGGNFFQ FVKMEQTEDH EDFLSGEEAC EFFSDEQPPS
301: LHWYSTVDHW N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)