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AT1G79160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXENeggNOG:ENOG410YYRAEMBL:BT003820EMBL:BT004946
EMBL:CP002684EnsemblPlants:AT1G79160EnsemblPlants:AT1G79160.1entrez:844257
GeneID:844257Gramene:AT1G79160.1hmmpanther:PTHR33177hmmpanther:PTHR33177:SF6
HOGENOM:HOG000241032KEGG:ath:AT1G79160OMA:VQGGHQDPhylomeDB:Q84JL6
Proteomes:UP000006548RefSeq:NP_178037.2SMR:Q84JL6TAIR:AT1G79160
UniGene:At.34163UniProt:Q84JL6
Coordinates (TAIR10) chr1:-:29779862..29780668
Molecular Weight (calculated) 26051.20 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.43
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)