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AT1G16500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXENeggNOG:ENOG410YYRAEMBL:AC006341EMBL:AY084506
EMBL:AY140027EMBL:BT006296EMBL:CP002684EnsemblPlants:AT1G16500
EnsemblPlants:AT1G16500.1entrez:838220GeneID:838220Gramene:AT1G16500.1
hmmpanther:PTHR33177hmmpanther:PTHR33177:SF6HOGENOM:HOG000241032IntAct:Q9SA48
KEGG:ath:AT1G16500OMA:CHSFVPLPhylomeDB:Q9SA48PIR:E86300
Proteomes:UP000006548RefSeq:NP_563999.1SMR:Q9SA48STRING:3702.AT1G16500.1
TAIR:AT1G16500UniGene:At.41880UniProt:Q9SA48
Coordinates (TAIR10) chr1:+:5639079..5639995
Molecular Weight (calculated) 28027.10 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.43
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)