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AT5G47060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF581)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT4G17670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J03AeggNOG:ENOG410YW5UEMBL:AB013394EMBL:AB025609
EMBL:CP002688EnsemblPlants:AT5G47060EnsemblPlants:AT5G47060.1entrez:834752
GeneID:834752Gramene:AT5G47060.1hmmpanther:PTHR33059hmmpanther:PTHR33059:SF31
HOGENOM:HOG000092976InterPro:IPR007650KEGG:ath:AT5G47060ncoils:Coil
OMA:YYNQYSVPfam:PF04570PhylomeDB:Q9FGQ9Proteomes:UP000006548
RefSeq:NP_199517.1STRING:3702.AT5G47060.1TAIR:AT5G47060UniGene:At.29915
UniProt:Q9FGQ9
Coordinates (TAIR10) chr5:+:19116843..19117639
Molecular Weight (calculated) 20383.30 Da
IEP (calculated) 7.03
GRAVY (calculated) -1.08
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)