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AT4G17670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF581)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT5G47060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J03AeggNOG:ENOG410YW5UEMBL:AY064001EMBL:AY117186
EMBL:CP002687EnsemblPlants:AT4G17670EnsemblPlants:AT4G17670.1entrez:827487
GeneID:827487Gramene:AT4G17670.1hmmpanther:PTHR33059hmmpanther:PTHR33059:SF31
InterPro:IPR007650KEGG:ath:AT4G17670ncoils:CoilOMA:PRSGKFH
Pfam:PF04570PhylomeDB:Q8VZM9Proteomes:UP000006548RefSeq:NP_567534.1
STRING:3702.AT4G17670.1TAIR:AT4G17670UniGene:At.27108UniProt:Q8VZM9
Coordinates (TAIR10) chr4:-:9833948..9834663
Molecular Weight (calculated) 18594.40 Da
IEP (calculated) 7.50
GRAVY (calculated) -1.06
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)