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AT1G55210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance-responsive (dirigent-like protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT5G49040.1); Has 829 Blast hits to 827 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYBYeggNOG:ENOG410ZQVAEMBL:AC027034EMBL:AY128336
EMBL:BT015679EMBL:CP002684EnsemblPlants:AT1G55210EnsemblPlants:AT1G55210.1
EnsemblPlants:AT1G55210.2entrez:841964GeneID:841964Genevisible:Q9C891
GO:GO:0048046Gramene:AT1G55210.1Gramene:AT1G55210.2hmmpanther:PTHR21495
hmmpanther:PTHR21495:SF59HOGENOM:HOG000240123InParanoid:Q9C891InterPro:IPR004265
KEGG:ath:AT1G55210OMA:ARTKWINPaxDb:Q9C891Pfam:PF03018
Pfam:Q9C891PhylomeDB:Q9C891PIR:H96593PRIDE:Q9C891
PRO:PR:Q9C891ProteinModelPortal:Q9C891Proteomes:UP000006548RefSeq:NP_001185232.1
RefSeq:NP_175917.1SMR:Q9C891STRING:3702.AT1G55210.1TAIR:AT1G55210
UniGene:At.17720UniProt:Q9C891
Coordinates (TAIR10) chr1:-:20598057..20598620
Molecular Weight (calculated) 20619.20 Da
IEP (calculated) 9.85
GRAVY (calculated) 0.11
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLIFFLAV QILFLAVVSS AGDGEDFART MDRKLLGLHK KEKLTHFKVY WHDILSGPNP TSIMIQPPVT NSSYFGAISM IDNALTAKVP MNSTVLGQAQ
101: GFYAGAAQKE LGFLMAMNFA FKTGKYNGST ITILGRNTAL SEVREMPIVG GSGLFRFARG YVEARTKWIN LKNGDATVEY SCYVLHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)