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AT1G43910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G05380.1); Has 21538 Blast hits to 20075 proteins in 2875 species: Archae - 1244; Bacteria - 8173; Metazoa - 2975; Fungi - 2572; Plants - 2413; Viruses - 32; Other Eukaryotes - 4129 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AC022314
EMBL:AK118165EMBL:CP002684EnsemblPlants:AT1G43910EnsemblPlants:AT1G43910.1
entrez:840990Gene3D:3.40.50.300GeneID:840990Genevisible:Q9LP11
GO:GO:0005524GO:GO:0005783GO:GO:0005794GO:GO:0009506
GO:GO:0009737GO:GO:0016021GO:GO:0016887GO:GO:0051365
Gramene:AT1G43910.1hmmpanther:PTHR23070hmmpanther:PTHR23070:SF31HOGENOM:HOG000237995
InterPro:IPR003593InterPro:IPR003959InterPro:IPR025753InterPro:IPR027417
iPTMnet:Q9LP11KEGG:ath:AT1G43910ncoils:CoilOMA:IMSHREN
PaxDb:Q9LP11Pfam:PF00004Pfam:PF14363PIR:C96503
ProteinModelPortal:Q9LP11Proteomes:UP000006548RefSeq:NP_175058.1SMART:SM00382
SMR:Q9LP11STRING:3702.AT1G43910.1SUPFAM:SSF52540TAIR:AT1G43910
UniGene:At.28764UniGene:At.48277UniProt:Q9LP11
Coordinates (TAIR10) chr1:-:16656050..16657628
Molecular Weight (calculated) 54240.90 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.39
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLYSQVPS VSAVFSLYTS FSAITMLFRT ILNEIVPKRI REYIAMKAVD FFSSYFQSDF TFVIEQRWEF VENQTFRAAE VYLPTCLAGL STGKLLVGSS
101: NLKNPAAEPK LGIPVNTKII DNFEGIHLEW TLHSVETKKY LPEKRYFHLT CKKEFREKIM TDYFTYLAKS AEKIMSHREN LKIYTYNQDR SKWESAIFEH
201: HTTFETLAVE PDLKKTLIDD LDAFSKGKDF FKSVGRAWKR GYLLYGPPGT GKSSMVAAIA NHMKYHIYDL QIQSVRDDGE LREILTSTKN RSILLIEDID
301: CGADASRRRQ SKKKEEDGGE DDGEPQKRKK KFEVGISLSG LLNFVDGLWS SCGEEKIIIF TTNHKEKLDP ALLRPGRMDV HILMDNCTPF VFKKLVALYL
401: KTDEHVLFDP IEKLILEVSS TPAEVTQQLM ASKNADIALK GLAEFLENKK LKKGEDSSVE EEGEIEDAET KEAET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)