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AT3G28580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-ATPase 1 (TAIR:AT5G40010.1); Has 26015 Blast hits to 22183 proteins in 2894 species: Archae - 1297; Bacteria - 7409; Metazoa - 4737; Fungi - 2999; Plants - 2564; Viruses - 69; Other Eukaryotes - 6940 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AP000420
EMBL:AY072076EMBL:CP002686EnsemblPlants:AT3G28580EnsemblPlants:AT3G28580.1
entrez:822488Gene3D:3.40.50.300GeneID:822488Genevisible:Q9LJJ7
GO:GO:0000304GO:GO:0005524GO:GO:0005783GO:GO:0009737
GO:GO:0016021GO:GO:0016887Gramene:AT3G28580.1hmmpanther:PTHR23070
hmmpanther:PTHR23070:SF5HOGENOM:HOG000237995InterPro:IPR003593InterPro:IPR003959
InterPro:IPR003960InterPro:IPR025753InterPro:IPR027417KEGG:ath:AT3G28580
ncoils:CoilOMA:FVYTIFKPaxDb:Q9LJJ7Pfam:PF00004
Pfam:PF14363PhylomeDB:Q9LJJ7PROSITE:PS00674ProteinModelPortal:Q9LJJ7
Proteomes:UP000006548RefSeq:NP_189499.1scanprosite:PS00674SMART:SM00382
SMR:Q9LJJ7STRING:3702.AT3G28580.1SUPFAM:SSF52540SwissPalm:Q9LJJ7
TAIR:AT3G28580TMHMM:TMhelixUniGene:At.42770UniProt:Q9LJJ7
Coordinates (TAIR10) chr3:+:10715736..10717238
Molecular Weight (calculated) 58512.00 Da
IEP (calculated) 6.81
GRAVY (calculated) -0.78
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMMGQLWTN TGSALATLMF VYTIFKQFFP LFGPQLEPFL YRLFGRFYPY IQITFHEYSG EHFKRSEAYL GIQSYLSKDS SARAKKLKAN TTKGSKSIVL
101: SMDDKEEITD DFEGIRVWWQ SKKEGATRQS FSFYPEANEK RYYMLRFHRR DREVIIERYL EHVMREGKTI EQKNRERKLY SNTPGQSHGN NSKWSHVTFE
201: HPATFDTLAM EENKKEEIKS DLIKFSKSKD YYKKIGKAWK RGYLLFGPPG TGKSTMIAAM ANFLEYDVYD LELTTVKDNT HLRRLLIETS AKSIIVIEDI
301: DCSLNLTGQR KKKEEEEEDG DDKNTIEKKM MMKNEGENKE SKVTLSGLLN FIDGLWSACG GERIIVFTTN FVDKLDPALI RKGRMDKHIE MSYCCFEAFK
401: VLAKNYLDVE ESEMFEEIKR LLEVEEIKMT PADVGENLLP KSEKEGGETC LKRLIEALKE EKEEAKKKVE EEEEEKQRKK EKVKEIEAEK EKKKKIEEEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)