suba logo
AT5G40010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-ATPase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 35875 Blast hits to 26437 proteins in 2942 species: Archae - 1242; Bacteria - 8120; Metazoa - 8429; Fungi - 4077; Plants - 2736; Viruses - 205; Other Eukaryotes - 11066 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AB010077
EMBL:CP002688EnsemblPlants:AT5G40010EnsemblPlants:AT5G40010.1entrez:833998
Gene3D:3.40.50.300GeneID:833998Genevisible:Q9FLD5GO:GO:0005524
GO:GO:0005739GO:GO:0005783GO:GO:0009409GO:GO:0009414
GO:GO:0009651GO:GO:0009737GO:GO:0010154GO:GO:0010431
GO:GO:0016021GO:GO:0016887GO:GO:0031966Gramene:AT5G40010.1
hmmpanther:PTHR23070hmmpanther:PTHR23070:SF5HOGENOM:HOG000237995InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR025753InterPro:IPR027417
iPTMnet:Q9FLD5KEGG:ath:AT5G40010ncoils:CoilOMA:KWTGLGS
PaxDb:Q9FLD5Pfam:PF00004Pfam:PF14363PhylomeDB:Q9FLD5
PROSITE:PS00674ProteinModelPortal:Q9FLD5Proteomes:UP000006548RefSeq:NP_198817.1
scanprosite:PS00674SMART:SM00382SMR:Q9FLD5STRING:3702.AT5G40010.1
SUPFAM:SSF52540TAIR:AT5G40010tair10-symbols:AATP1TMHMM:TMhelix
UniGene:At.65609UniProt:Q9FLD5
Coordinates (TAIR10) chr5:-:16020218..16021762
Molecular Weight (calculated) 60350.80 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.85
Length 514 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKMGEVWTN TGSALASLVF IYTIFERFFP YRLREHFEPL AQSLIGFIYP YIQITFHEYS GERFKRSDVY DAIQSYLSKD SSSRAKKLTA NTIKGNKSII
101: LSMDDHEEIT DEFQGVKVWW QSKKHQSESR AISFYPKADE SRFYMLKFHR RDREVITKKY LNHVISEGKT IEVKNRERKL YSNNPSQNWS GYKQTKWSHV
201: TFEHPATFDT LAMEYKKKEE IKNDLIKFSN SKDYYKKIGK AWKRGYLLFG PPGTGKSTMI AAMANLLEYD VYDLELTTVK DNTELRRLLI ETSGKSIIVI
301: EDIDCSLDLT GQRKQKKDEE EDEDETSPIE KQMKKDQGEN KGSKVTLSGL LNFIDGLWSA CGGERIIVFT TNFIDKLDPA LIRKGRMDKH IEMSYCGFEA
401: FKVLANNYLD AKEEDDNELF DEIKRLLEVE EIKMTPADVG ENLLKKSEVE TKEICLKRLI EALKEEKEEA KRRIEDEEKK KKEEEEIKRK KREEKKIKKE
501: EKEEKEENET TMKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)