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AT5G38910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G38940.1); Has 1503 Blast hits to 1497 proteins in 89 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 37; Plants - 1447; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
EMBL:AB009048EMBL:CP002688EnsemblPlants:AT5G38910EnsemblPlants:AT5G38910.1
entrez:833883Gene3D:2.60.120.10GeneID:833883Genevisible:Q9FMB0
GO:GO:0030145GO:GO:0045735GO:GO:0048046Gramene:AT5G38910.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF42HOGENOM:HOG000235000InParanoid:Q9FMB0
InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
InterPro:IPR019780KEGG:ath:AT5G38910OMA:HEARPPNPaxDb:Q9FMB0
Pfam:PF00190Pfam:Q9FMB0PhylomeDB:Q9FMB0PRIDE:Q9FMB0
PRINTS:PR00325PRO:PR:Q9FMB0PROSITE:PS00725ProteinModelPortal:Q9FMB0
Proteomes:UP000006548RefSeq:NP_198707.1scanprosite:PS00725SMART:SM00835
SMR:Q9FMB0STRING:3702.AT5G38910.1SUPFAM:SSF51182TAIR:AT5G38910
UniGene:At.55232UniProt:Q9FMB0
Coordinates (TAIR10) chr5:+:15578811..15579584
Molecular Weight (calculated) 23885.70 Da
IEP (calculated) 6.94
GRAVY (calculated) 0.20
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSFSFLAVL SILAITLSLS KASDPSSLQD FCVGVNTPAD GVFVNGKFCK DPKLVTVEDF FFTGLHEARP PNPKTGSNVT AVNVNNLPGL NTLGISLVRI
101: DYGVYGQNPP HTHPRASEVL YVAVGTLFVG FVTSNPENRL FSKTLYEGDV FVFPQGLIHF QVNVGKYPAV AFAGLSSQNP GVITIADTVF GSNPQIDPSF
201: LASAFQVDPK IVMDLQTKFI KP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)