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AT1G18970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : germin-like protein 4
Curator
Summary (TAIR10)
Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).
Computational
Description (TAIR10)
germin-like protein 4 (GLP4); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:23717eggNOG:ENOG410IW0AeggNOG:ENOG410YKM8EMBL:AC068602
EMBL:BT024837EMBL:CP002684EMBL:U75187EnsemblPlants:AT1G18970
EnsemblPlants:AT1G18970.1entrez:838478Gene3D:2.60.120.10GeneID:838478
Genevisible:P92995GO:GO:0005618GO:GO:0030145GO:GO:0033609
GO:GO:0045735GO:GO:0046564GO:GO:0048046Gramene:AT1G18970.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF46HOGENOM:HOG000235000InParanoid:P92995
InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
InterPro:IPR019780KEGG:ath:AT1G18970OMA:FESSTKCPaxDb:P92995
Pfam:P92995Pfam:PF00190PhylomeDB:P92995PRIDE:P92995
PRINTS:PR00325PRO:PR:P92995PROSITE:PS00725ProteinModelPortal:P92995
Proteomes:UP000006548RefSeq:NP_564067.2scanprosite:PS00725SMART:SM00835
SMR:P92995STRING:3702.AT1G18970.1SUPFAM:SSF51182TAIR:AT1G18970
tair10-symbols:GLP4UniGene:At.11327UniProt:P92995
Coordinates (TAIR10) chr1:-:6554702..6555364
Molecular Weight (calculated) 23215.00 Da
IEP (calculated) 7.44
GRAVY (calculated) 0.33
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)